rs48106235 SNP Detail

Summary

• ID
  rs48106235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40578698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCAGCTG GTATTTAATG ATTGCACAGA CCACGGGACA
  CAGTGTGAGA TGATGCATGC GTGTCCTCAT CTGTTTCTTG TCGCTGAGAC AGAGTACTGA
  Y
  GGGATGAACT AGGGAAGGAA GGGTCTCGGG AGCCTCAGCA AGAGAATCTA ACAGCTGATG
  CAGTCTAGGA GATAGAAAAG ACCCTGCCAT GAAGCTACAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393128	NES15896643	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48106235					SNP	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393128	NES15896643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40578698 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	1637 bp upstream
Rr575827	regulatory region 575827	738 bp distal
Rr575828	regulatory region 575828	808 bp distal
Rr575829	regulatory region 575829	734 bp proximal
Rr575830	regulatory region 575830	990 bp proximal
Tssr33066	transcription start site region 33066	1631 bp upstream