rs48106457 SNP Detail

Summary

• ID
  rs48106457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24006914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGTTTT TGGTTCTTTT
  TCAGAGAATT GACATACAGA CACAGATTCA TAAAAGTATG GAGGAAATCT TATTCAAAGC
  AAAGGATGGG TCAGATGCAC TGTAAACTCT GACTGCAGGC CCTTGTTAGC CGAGCTTTCT
  CTTATGGGCT TCGGTAGTTA CCAGAACTCT TACTTTGAGT GCTCCTCTAT TTTGATTGGT
  R
  GTAGCTTTTG CTCACTGCGC ATGTCCTTGC CCATAATGCA ACTGATTTTG ATCATATGTT
  TGCCCACTTA TGTATAGGTC TAAGATAACA AATAGGGGAT TTTCCCAAAA TGTTTACTTG
  GAAAATAAAC CTGGGCTTAT CATATATTGT AGTGGGTTCA GTAAGAAATG CCCTCCATGC
  CGGGCATGTT GGCGCATGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327357	CHEV_17_23924907	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48106457					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24006914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	1620 bp distal
Flywch2	FLYWCH family member 2	1859 bp upstream
Tssr146663	transcription start site region 146663	1857 bp upstream
Tssr146664	transcription start site region 146664	1818 bp upstream
Tssr146665	transcription start site region 146665	1703 bp upstream
Tssr146666	transcription start site region 146666	1940 bp downstream