rs48106915 SNP Detail

Summary

• ID
  rs48106915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTCAC AGATCCATAT
  AACAAAAGCC ACCTTAACCT TGGCCTCCAC TGCTTCATGT GCCTGTCCTT CAAAGGGCAG
  GTGATCCTCC CCTTTTCTGA GTCTCCGATC TGAGGCTGGC CTCCAATTCA CTCTGTAGCT
  GAGGACCCTC AAGCAGGATG TGGCAGTGTT GCCTGTAATC CCAGCACTCG GGAGGCAGAG
  R
  CATGAGATCT AGATCATCAT CATCCTCCCT ACATGGGACA TTTCTGACTA GCCTGGGCTA
  AACCAGACTG TCTCAAAAAA CAAACAAACA AACAAACAAA CAAACAAACA AACTTGGGAG
  GCAGAGGCAG GCAGATTTCT GAGTTCAAGG CCAGCCTGGT CTACAAAGTG AGTTCCAGGA
  CAGCCAGGGC TACACAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132546910	ENSMUSSNP4713537	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323782847	CHEV_11_88786824	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48106915					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816336 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1234 bp upstream
Tssr110048	transcription start site region 110048	1217 bp upstream
Tssr110049	transcription start site region 110049	1162 bp upstream
Tssr110050	transcription start site region 110050	951 bp upstream
Tssr110051	transcription start site region 110051	913 bp upstream
Tssr110052	transcription start site region 110052	895 bp upstream
Tssr110053	transcription start site region 110053	867 bp upstream
Tssr110054	transcription start site region 110054	800 bp upstream