rs48107917 SNP Detail

Summary

• ID
  rs48107917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73261082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCACAGT TATGAGATGA
  CTTACTTTCA TGACATTGGG CTGATAGTAT GCAAATGTAT TACCTTTTAT TAAGTTCCCA
  CTGATTTTGA ATGAGATATT AGAATATAAG TACAATATCT TAGAATCTAG GGACTCTTTT
  GGCTGAGTTT CTGTAGGAAG TCCAAATGAA ATCTCTTGTA TCAGTTCACT CTGTGGTGTT
  W
  CCACTGAATT GTTTACTCCC AGACACCAGT TTCTTATTTC ATTTCCCGTT GAAAGAAACT
  TAAGGGACTA AGACTTGTTT TTAGCTTGTA GTTCAAGATG CACTTCCCTG TGGGGCAGGC
  AAGGTGGCTG GAGAGGGACA CAGCTGGACA CATGGCATGT ACAGTCAGGA ATCAGAGAGA
  CTAGTGGATG CCTTCAGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148341226	ENSMUSSNP5549170	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48107917					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73261082 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	within coordinates
Rr518000	regulatory region 518000	1328 bp distal