rs48108448 SNP Detail

Summary

• ID
  rs48108448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100592245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCACTGT GTAAGTTATT
  ATGAACAATC TAGAAAAGAT TTAGTATATT CAGTAGAACA CATACAAGGT ACACACAGTA
  CTACGAACCA CTTTGTAAAG GAGACAAGCA TTTGCTGGCT CTGGTCTGCA AGTAGAGGCT
  ATGTCCCCAA GCCTCTATCC CCAAGGATAC TGAGGGCAAC TATATGTTCC ACATCTAAAA
  Y
  GTTGCTATGA TTATTACTTT ACATTTTTTT CTCTGCAAGT ACATATTTAT AGTTTGTTAT
  ATATCAGTCT TCCAAGTTAT TTTTCATTTT CTGTTTCTGT GGGAGGTCCA AATTATGAAC
  TTATTCCAAC TCCCCTAGTC CACCCTGGCA ATGTGTGTTT GTTTTGTCTT GAGCCACTCT
  TACATGGTAG CACAGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52603392	NES15444853	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48108448					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52603392	NES15444853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100592245 () rs orientation: forward

Symbol	Name	Function Class
Gm48585	predicted gene, 48585	within coordinates
Rps6ka5	ribosomal protein S6 kinase, polypeptide 5	within coordinates
Rr471317	regulatory region 471317	517 bp proximal