rs48109647 SNP Detail

Summary

• ID
  rs48109647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATCCAT GAGTGAAGCT
  GGTCTCCATG AGTCTGGTAC CCACATACTG AGTACCACAC ACCCGAAATG ATACCCCTTG
  GCTCATAAAG GACAGCTGAC CGGGGCGTTT CTGCTTGCTA TTGAGGATAC GGTAAAACAT
  AGAGCCCGTG TGAGGTTACA CCTCCAAAGG ACAGTTTGAT TTGGGGCTTT ATTAATCAGA
  R
  GTCTATCTGT CCCGCAGGAA TGAGGATGTA GTTCGGTTGG TAGAGTGCTT ACGCAGCATG
  CAGAAAACCC TGGCCCCGAG CCCCAGAGAC GTATTAATAA AACAGCGCAG GCTAGACACC
  ACTGAGGCCT GTAATCGCAG GAGGGCGGAA GCAGGAGAAT CAGAAGTTCA AGGTCATCCT
  TGGCTACATG GCAAGTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148399980	ENSMUSSNP5344935	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48109647					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	308 bp proximal
Gm71929	predicted gene, 71929	1146 bp downstream
Pnma8b	PNMA family member 8B	536 bp upstream
Rr368243	regulatory region 368243	310 bp upstream
Rr642821	regulatory region 642821	777 bp distal
Rr642822	regulatory region 642822	46 bp proximal
Rr642823	regulatory region 642823	459 bp proximal
Rr642824	regulatory region 642824	1497 bp proximal
Tssr64660	transcription start site region 64660	499 bp upstream
Tssr64661	transcription start site region 64661	1548 bp upstream
Tssr70792	transcription start site region 70792	1503 bp downstream