rs48110555 SNP Detail

Summary

• ID
  rs48110555
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4298254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGGCCC CCCTTGTAGA
  AATTTCAGTA CATCAAGAAA GCCCTTATCC ATGGCTGGCC TTGAGCATGT GCTCAGATGT
  CAGCCCCTCC ATCCTCCGCC CCCGCTCCCT GCTTCCCAGG GTGGCAGCCT CACCAAGGCC
  AGGGCTACCT ACCCACACCT AGAGGGCTGG GTACAGCCCA GCCAGGTGCT CGCTGCCGGT
  S
  TGGAGCACTC GAACCTGGAC AGGCCGCCAT GGTGGGCACT GCGCTCCTGC TCCTGGCCCT
  GCTCCCTGGG ACCTCCAGTA AGCACGGTAC ACCACGTGGT ACGTAGAGGC TGCCACGGGG
  TGGGGGCATT GTGTCCCACT TGCCCATTGT CCCTTCTCAA CTGCGTTTTG CACCTGGATG
  TGTGTGGTGG TGTGGGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075435	NES16047355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48110555					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075435	NES16047355	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4298254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20049	CpG island 20049	1013 bp proximal
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	within coordinates
Map2k7	mitogen-activated protein kinase kinase 7	357 bp downstream
Tgfbr3l	transforming growth factor, beta receptor III-like	within coordinates
Tssr76110	transcription start site region 76110	35 bp downstream
Tssr76111	transcription start site region 76111	13 bp downstream
Tssr76112	transcription start site region 76112	within coordinates
Tssr76113	transcription start site region 76113	1203 bp upstream