rs48110844 SNP Detail

Summary

• ID
  rs48110844
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58670472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATCATGTCCT TTGTAAATAT TATTAATGCT TCTGATCACC
  TAAGAGAGCG CTCAAGGCTC TTGGTAATGC TGTGGTGAGA GTGCTAGAAT TGGCCACTTC
  C
  GTTATCTCTC TGGTCAGACA TCTCTGGAGG GATTGAACGG CAGGAGACAA GGAGGGACTC
  TGAGACAAGT CTGATCTTTT CTATGGTCCT GCTTCTCTTA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146566768	ENSMUSSNP946047	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48110844					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58670472 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	241 bp downstream
Tssr157284	transcription start site region 157284	1983 bp downstream
Tssr157285	transcription start site region 157285	1278 bp downstream
Tssr157286	transcription start site region 157286	1231 bp downstream
Tssr157287	transcription start site region 157287	1203 bp downstream
Tssr157288	transcription start site region 157288	283 bp downstream
Tssr159962	transcription start site region 159962	254 bp upstream