rs48111454 SNP Detail

Summary

• ID
  rs48111454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:89801775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTGTTT TTTTTTTTTT
  TTTTTTTTTT GCCAAGAACA CTTTTTTGAG ACAAAGGACA GTGAGTGATT CATAGAGAGT
  AGATCAGTGT CTTAGTCATG CTCTCAGGGC AGGCAGGAGG CTGAGGGCGC AGATAATTGT
  TTTTCCTTGG AAAAACATTT CCTCCACCAT TTAAACTCTT CACATTCATC TGATAGCACC
  R
  TCATATTTTT GTGACTGCTT TAAAGATCCT GCTGCCCACA CTTGAAAAAC TCACATTATA
  GCCAGACCTA ATCGCCTCAT TTCACCTTCC CTTGGTTTTC ATTGACTGAA GCTTGTCCAC
  AAGACTCTTT ACTGTGGCTT CCTCTTAGTT AAGACACAGA ACAAATGAAA AGAATGGGAT
  CCAGGTAGAC TTTGGCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61669139	NES17625711	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48111454					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61669139	NES17625711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:89801775 () rs orientation: forward

Symbol	Name	Function Class
Nrxn3	neurexin III	within coordinates
Rr387610	regulatory region 387610	1248 bp downstream
Tssr114574	transcription start site region 114574	169 bp downstream