rs48112182 SNP Detail

Summary

• ID
  rs48112182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT CTCGCCAGCC CCGGAAACTG
  Y
  TTCTAAGACG CCCTACATGT ATAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60846277	NES16011300	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C	T	C	T	T		T	C	C	T		T
ss144502812	ENSMUSSNP4251546	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321695273	CHEV_5_134741499	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48112182					SNP	C	C	T	T	C	C	C	T	C	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846277	NES16011300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294483 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	1436 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1196 bp upstream
Tssr53620	transcription start site region 53620	448 bp downstream
Tssr53621	transcription start site region 53621	955 bp downstream