rs48112303 SNP Detail

Summary

• ID
  rs48112303
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134485651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA GAGCTACATA GTGAAACCTT
  S
  ACTCAAAAAT GTGGTAAATT CTATA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145508340	ENSMUSSNP412105	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss319983168	CHEV_1_136454490	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48112303					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134485651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	853 bp distal
Cpgi773	CpG island 773	1973 bp proximal
Gm57134	predicted gene, 57134	811 bp upstream
Rr367005	regulatory region 367005	653 bp downstream
Rr418945	regulatory region 418945	822 bp distal
Rr418946	regulatory region 418946	1922 bp distal
Rr418947	regulatory region 418947	1479 bp distal
Rr418948	regulatory region 418948	460 bp distal
Rr418949	regulatory region 418949	1775 bp proximal
Tssr13798	transcription start site region 13798	911 bp upstream