rs48112741 SNP Detail

Summary

• ID
  rs48112741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25096952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGCCCG GTGTAAAGGG
  AGACAAACCC TGTTTTTACT CCCGTGTTTG CTGTTCCCAA ACTGTAGGGC CGTTTGTAAG
  ACCCTCATTG TTTATATACC TCAGCGTTCA TTCCTTCTCG ACAGACTGGG CTGGGGATGA
  GGGGTGCGCT TTATTTTACA GAATCCTTCA GAGATGACCT GAGCGTTATG ATCGCAGATA
  Y
  AGAAAATACT TAGCACAACT AAATGACTGG CCCGGGAAGG CTCTGTCTAG TCTTCCAGGT
  TCAGACTCAC CTGTGTCCCA GTAGTGTTTG TGTTTCTGGA TGCTAGTCTT CTTCCCGTGT
  GGTAATTTAC CGCCATATCC TGACAGCTTT TCAAACTCAG GTTTCTTTTT GGAGAGCAGT
  GCCATTTCCG GGATCGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60980628	NES16142634	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48112741					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980628	NES16142634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25096952 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cpgi18601	CpG island 18601	1722 bp distal
Cpgi18602	CpG island 18602	1060 bp distal
Cpgi18603	CpG island 18603	612 bp distal
Lipe	lipase, hormone sensitive	within coordinates
Rr155534	regulatory region 155534	1849 bp proximal
Rr167273	regulatory region 167273	551 bp distal
Rr400174	regulatory region 400174	1650 bp downstream
Rr400175	regulatory region 400175	1306 bp downstream
Tssr65125	transcription start site region 65125	1334 bp downstream
Tssr65126	transcription start site region 65126	1042 bp downstream
Tssr71238	transcription start site region 71238	1989 bp upstream
Tssr71239	transcription start site region 71239	1940 bp upstream
Tssr71240	transcription start site region 71240	1832 bp upstream
Tssr71241	transcription start site region 71241	1170 bp downstream