rs48114206 SNP Detail

Summary

• ID
  rs48114206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88189245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGACTA CACAATGGCC
  GAGAGAATAG GTGGATTTAC CATGAAAGAG TTAGGGAATC CCCCTGAGAC AGGTTTCTTC
  ACTAGGCCCA AAGGAACAGC ATAATCAGGC ATTTACTAAG AACCCCTGGT GGTGGGCTTA
  GCAATAGACT AGCATTACAC CTGGCTCCCT TCTTAATGGT AAACAGTGGC CTGGTCCCCC
  R
  CCATCTTTTG ATGTATACAT TCCTTTTGTT TTGTGTCACT GTAACTCGCC TGGTTTCTTG
  TTATTCTTCT GTATTAAAAG TTTGATGATT TGACAAATTA CACTCAGATT CAACACGCTC
  TCTCGTGTCG TCTCTGTTTG TCACCCACTT TCACCAACTC CTTCGCCCAC CTGCAACCAG
  AGACCCTTTC CAAAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135470187	ENSMUSSNP5548552	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48114206					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88189245 () rs orientation: forward

Symbol	Name	Function Class
Gm38392	predicted gene, 38392	within coordinates
Rr375311	regulatory region 375311	within coordinates
Rr579701	regulatory region 579701	488 bp distal
Tsacc	TSSK6 activating co-chaperone	819 bp downstream
Tssr931	transcription start site region 931	99 bp upstream
Tssr33995	transcription start site region 33995	652 bp upstream