rs48114744 SNP Detail

Summary

• ID
  rs48114744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAGAAAT CAAAGGATTA
  CTGAAATAAG TGTGTGTGCG CGTGTGTGTC AATAAATTCA TCATTATTAA GCAGTTTACA
  TTCTTGTGTG TCTAGTGATA GGGGTCCTTT CCAGACACCT ATGTGTGGAT AATTTGTGGG
  ACCCAGGCTT CCTTTTAACC TGGTGCCTTG CCTCTGAGAA GAATTCCAAA GAGAACGGGC
  Y
  AGGTGGATGA CCTGCAGTGG CAGACCATTG GCAGAGGAAG TGGATCTCTG CCCTTGTCTC
  AAAAGGCACT GATGAGAAGC GGTGACAGGA CTGGAAACAG AGCTCACCCT TTCCCTCAAT
  GACCCACATC TTCCAGCTGG GTCCCACAGC CCACAGGCTC CACACCCCCA GCAAGGCCAC
  TACTACCTCT GCCCTGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295892	CHEV_13_24466248	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48114744					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558362 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	220 bp proximal
Rr476039	regulatory region 476039	962 bp proximal
Rr476040	regulatory region 476040	1561 bp proximal
Tssr4016	transcription start site region 4016	1671 bp upstream
Tssr118891	transcription start site region 118891	862 bp downstream
Tssr118892	transcription start site region 118892	1655 bp upstream
Tssr118893	transcription start site region 118893	1691 bp upstream
Tssr118894	transcription start site region 118894	1755 bp upstream
Tssr118895	transcription start site region 118895	1789 bp upstream
Tssr121784	transcription start site region 121784	1563 bp downstream
Tssr121785	transcription start site region 121785	1583 bp downstream
Tssr121786	transcription start site region 121786	1643 bp downstream