rs48116047 SNP Detail

Summary

• ID
  rs48116047
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154278411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CTGTGTCGCC CTGACTGTCC
  K
  GGAACTCTCT GTAGACCAGG CTGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136117018	ENSMUSSNP6613169	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48116047					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154278411 () rs orientation: forward

Symbol	Name	Function Class
Rr587867	regulatory region 587867	1259 bp distal
Rr587868	regulatory region 587868	within coordinates
Rr587869	regulatory region 587869	246 bp distal
Rr587870	regulatory region 587870	78 bp distal