rs48116944 SNP Detail

Summary

• ID
  rs48116944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122519652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CCCAAACCTC AGACTCACCA
  Y
  GACTACATAA GGGGGGAGGG GGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145806746	ENSMUSSNP6744721	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322844742	CHEV_8_124316813	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48116944					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122519652 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1830 bp downstream
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	574 bp downstream
Tssr79824	transcription start site region 79824	441 bp downstream
Tssr79825	transcription start site region 79825	425 bp downstream
Tssr83237	transcription start site region 83237	724 bp upstream
Tssr83238	transcription start site region 83238	703 bp upstream
Tssr83239	transcription start site region 83239	681 bp upstream
Tssr83240	transcription start site region 83240	640 bp upstream
Tssr83241	transcription start site region 83241	564 bp upstream