rs48116957 SNP Detail

Summary

• ID
  rs48116957
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACAACC TCGGGACTCC
  ATGGCCCCGG TGCCCGAGGG CTCACAGGAC TCAGCTCAGC AGTCTAGACT GGGTCACTGG
  ATAGTCCCGG TGTTAGCAGT ATGCTAGGGT GCAAAGGACC GACCCGGCAA AATCGCAGGG
  TTTCCAGGCA GCGATTCCAC CATGCACATC AGAGTTATCA CTGCAGCTTC GTTCGGCACC
  S
  GGAGGTGGAG TGGCAGTGGT GGCGGGGGGC GGCAAAGCAC CCGCAGCAAC CAAGGGACAG
  CAGGGAGGAG GGTAGAGAAG GAGAGGGCAG GACTAGGGAG GGCAAAGGAG AGGAGAGGGG
  AGGGGATAGA GGAGGGAGTA AAGCAGGGAG GAGGGGTACC AGGAGGAGGA GGAGGATAAG
  GGAGGAGTGG CAGGGAGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651860	NES15472160	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		G	G	C		G
ss324417476	CHEV_13_70980606	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48116957					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651860	NES15472160	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989847 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	12 bp upstream
Tssr123159	transcription start site region 123159	1 bp downstream
Tssr123160	transcription start site region 123160	34 bp downstream
Tssr123161	transcription start site region 123161	62 bp downstream