rs48117365 SNP Detail

Summary

• ID
  rs48117365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116743164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATAGTA TTAAATGGTT
  TCTTGCAACA ATCTGAGCAG TAGTCGATTC TGTACAATTT CCTGGAAGAC TGGAATCAAA
  ATGAACTAAC CTTTCAATGT TAGGTGAAAG GCCATCCGAA GCTGAGATTT TCTATGTGGG
  ATTTTTTATA AAAGTATAAT GTATAATAAC AGAGATAGGA TTATTTAACA TTGTGTGTTT
  Y
  ATTTTAAGTA CACACATTTC CTTCAAGGGC TTTGACACTT TAACTTATCA ATATATTAAG
  TTTTTCATAA CATTGTCTTA TTTTCCTTTG GACATCTGTA GAATCTGCAG GGCTGCCAGC
  ATCCCTCTTC TGTTAGCAGC TGGGCCACTC TTCCCTCCCA TCCTTTCCCT TTCTCTTCTT
  GCTCCTCCCT CTCCTCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133579178	ENSMUSSNP4599506	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321919025	CHEV_6_116716221	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48117365					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116743164 () rs orientation: forward

Symbol	Name	Function Class
Gm22882	predicted gene, 22882	551 bp upstream
Rr637250	regulatory region 637250	1562 bp proximal
Rr637251	regulatory region 637251	1687 bp proximal