rs48118311 SNP Detail

Summary

• ID
  rs48118311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54361879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATAAGC TCTGGTGCTC
  ACAAGTCACC AGACTGGCTT CTAGGAGAGC AACAAGGCTC TCTGCCCTGC CTCTGACTTT
  CCACTTGTTT TCCAAGGTTA AGGGAAGGCC TGTAATTTTT AATTAAGAGG TCAGGAGGGT
  CCTGAGTGTG GGAAGTGAAG GAAACAAAGG ATCTGGAGCC AAGAAGGGAG ATCCAAGTCC
  R
  AGGCCACCTT CAGACCCTGC GAGCACCTAC TGTAGAGACA CAGAGCAAGG GAGAGACAGA
  CCGAAGCTAA AGCAACAGTG AAGTAGGGAA ACTCAAGTTT GCCATCCTTT GGAAGAGTTT
  GCAAAGTCAA GCAACTCAGA CGTTTGCCTT TAAATTTCTT TGACTTTAAA ACATCTCACT
  AAAATAACAG CATTTCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62394202	NES17237465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48118311					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394202	NES17237465	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54361879 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr297183	regulatory region 297183	78 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdj1	T cell receptor delta joining 1	1234 bp downstream
Tssr125539	transcription start site region 125539	1263 bp downstream
Tssr128533	transcription start site region 128533	792 bp upstream
Tssr128534	transcription start site region 128534	991 bp downstream