rs48118388 SNP Detail

Summary

• ID
  rs48118388
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73605778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCGTGT CCCGGCCTGG
  CTAGGGCAGG GACACCTTAG CTGTGATGCT TTCCTAGGCC CAGTACACCC CGCTGATACC
  AGGGGATCTT CCCTCTGCTC TTCCCTTGGC CTGCCAAGAC GAGGGCATTT GGATGGACAG
  AGTCAGGCTA ATTTGGGATC CTAGGCCTGT GTTCACAGCT GGGAGGCAAC ACCCAGAGAA
  K
  CCACAGGATA CGGCACATAA GCCCGCTGAG CACGGGAGCA GAAGGATGGG TCCTGGTCCT
  CAAAGATTCC AGAGATGATA TAGAGACCAT CAGGCCATGC AGGCTAGGGT GATCTGGAGA
  GTGTGTGCGT GGTTTCTGGC CAACAGCTCA GCAGGTCTGT GACCAGAGAG TCCCCTAGAG
  AGTCCAGAGA CATCATTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52569511	NES15628729	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48118388					SNP	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52569511	NES15628729	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73605778 () rs orientation: forward

Symbol	Name	Function Class
Ptp4a3	protein tyrosine phosphatase 4a3	within coordinates
Rr311850	regulatory region 311850	977 bp distal
Rr369950	regulatory region 369950	1207 bp downstream
Rr369951	regulatory region 369951	1053 bp upstream
Tssr134712	transcription start site region 134712	1142 bp downstream