rs48118457 SNP Detail

Summary

• ID
  rs48118457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAAGAA ACCCTAAAAA
  GAGGAGTAGA TCCCTACCCA ACCAGAACCT TGGCCCTTCC CCCAGAGTAA GCCTCACCCA
  CCGACAATGG GGGATGTGGG TCCACTTCAG AACCACCCAA CTGGCGTTTA ACTCAACGCA
  TTAAAGTTTT CAGAGGCCTC TGTCAGAATT CAAGCCAAGC CTTAATTAAC CCTAGCCTAT
  M
  TACCTGCGGC CTTCAAGCTC GCCGCAAAGC TTTGGCCACA CCCACGGGAG TCCAGTCTGA
  GCGTCAGAGC CCGCCCCATT CAGAGGCCCC GCCCACCGCC ACCACCCTGG GCCTTCCAAG
  CTCGCTCACG CAGCAGACGC AGGCCGCCGC CGGGCTCCCG CAGCACGGTG GCGCAGTCTC
  CGCCGCAGAG CGCGCGATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60987105	NES16140768	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48118457					SNP	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987105	NES16140768	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854970 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	135 bp upstream
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	908 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1584 bp downstream
Rr400219	regulatory region 400219	567 bp upstream
Rr644490	regulatory region 644490	1317 bp distal
Rr644491	regulatory region 644491	within coordinates
Rr644492	regulatory region 644492	157 bp proximal
Rr644493	regulatory region 644493	628 bp proximal
Rr644494	regulatory region 644494	651 bp proximal
Rr644495	regulatory region 644495	776 bp proximal
Rr644496	regulatory region 644496	1765 bp proximal
Tssr65599	transcription start site region 65599	98 bp upstream
Tssr65600	transcription start site region 65600	126 bp upstream
Tssr65601	transcription start site region 65601	199 bp upstream
Tssr71610	transcription start site region 71610	52 bp downstream
Tssr71611	transcription start site region 71611	77 bp downstream
Tssr71612	transcription start site region 71612	172 bp downstream
Tssr71613	transcription start site region 71613	391 bp downstream
Tssr71614	transcription start site region 71614	418 bp downstream
Tssr71615	transcription start site region 71615	627 bp downstream