rs48118814 SNP Detail

Summary

• ID
  rs48118814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7887104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCTCTT TCTCTTGCTC
  ATTGATTATG TTGCCTCTGT CTATAGTGTA CTTCCTGCTC TTTGAGAGAG AACACATCCT
  TAAGGACCCC GTTCATGTTA GCTCAGCACC AACGTCTTCC CTCAGCGTCC AAGTAGAAAC
  AGTTGATTCT TTTCTCTGTA CGAACAGCTC AGAGTGGGTA GTTCAGAGAG ATGTACTCCC
  R
  TTCTTCAGCA AAAATTTAAC GTTACTTCCC CTCTTTGTGT GCTTGTATGG GTGGGCGAGG
  GGAAGTGCGG AGAGGGTTAT CAGATACCTG AAGGTGCGTA GAAAGACAGA GGCTGAGAAG
  AGGGGGATAC TAGTGCTCCT TTGGCAAGGG GGAGAGGATG CTGGAGACCC CAGACACAGA
  CACATGGCTG AAGTACAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52132917	NES15239850	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48118814					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52132917	NES15239850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7887104 () rs orientation: forward

Symbol	Name	Function Class
Gm48614	predicted gene, 48614	within coordinates
Rr220488	regulatory region 220488	303 bp distal
Rr223603	regulatory region 223603	1100 bp distal