rs48119097 SNP Detail

Summary

• ID
  rs48119097
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156039738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTAGTGA ATGTGGGGGT
  CAGTTCTTTT TTTCTTAGTC CTTTAGTGTG GAATGCGCAC CCCTTTCAGG CTCTTCTCCA
  AATCCTGATG CTTCTGGCAC ATAGTTTGCA GTTTCATCTG TAAGGGGCTT CACTAACGTG
  TCCTTAAGTA TGTCTTGGGG CTGCACTCTT TGATGAGTTC TCCAAGCTAC CTTGTTTCTC
  S
  GGGGGGGGGG GGGAGGGGAT TTGTTTTCCT ATCTGAGAGT ATCTTTGCTT TCAGTGTCCC
  TTTAAGGTTT GAGATGCGCC TCTTTTAGCA GGAAACAGAC CACCTTTGGG GCGCAGCAAG
  TACTTCTGGC ACACTTTTCT CCTGAATCCT TTCATTCCTA AATGTGGTGC ACCCCCCACC
  CACCCATTTT TCCCACAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320578152	CHEV_2_156023554	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48119097					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss148068251	ENSMUSSNP3053609	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156039738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	521 bp distal
Gm75148	predicted gene, 75148	1101 bp upstream
Phf20	PHD finger protein 20	within coordinates
Rr374122	regulatory region 374122	1491 bp upstream
Rr397432	regulatory region 397432	1059 bp downstream
Rr568209	regulatory region 568209	1166 bp distal
Rr568210	regulatory region 568210	625 bp distal
Rr568211	regulatory region 568211	1289 bp proximal
Tssr21145	transcription start site region 21145	1043 bp downstream
Tssr27045	transcription start site region 27045	1257 bp upstream