rs48120232 SNP Detail

Summary

• ID
  rs48120232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC AGTCCTTAAG ATGGTTTTAA
  R
  TGGTTTATAA GGTTGTAACT TCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148805384	ENSMUSSNP1319488	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322156705	CHEV_7_36019116	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48120232					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	462 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1252 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	673 bp downstream
Rr645337	regulatory region 645337	712 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	534 bp proximal
Rr645340	regulatory region 645340	596 bp proximal
Rr645341	regulatory region 645341	1263 bp proximal