rs48120987 SNP Detail

Summary

• ID
  rs48120987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80702154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCATTG GTAGGTGGTT
  ACACTGCTGT CCCACTCTTC TCTGTCTTTT GTCTGTCACC TTCTGGTCCC TAAGACCCTA
  GTTCTACTTG TCCTAAGCTG ATTTTAAGTG TCACCTAGTG GGGCTGGGCT TGAGTAGTTG
  AGTGTCTGGC CCAAGTGCTT CCTATACAGG CATCCAGGGC CACCCACTGT CCTCACTGAC
  Y
  TGCACAGCCC TGGGTATGAG GTTTCAGGTC CTTCTGCCTC AGCTACCACG GTTCTGGGAT
  CCCGGCTTGT GGCTAGTGCT CTCCCCAATG ACTGCCCTTG CACCCCTCTG TGGTGGCACC
  CTGACCAGGC ATTGCTCCCC CCAGGTGCAG CTCGACTGAC ACTCTCTCTG TCCCTGCAGC
  CTATGGCCTG GGCCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss61290433	NES16913228	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs48120987					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290433	NES16913228	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80702154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1916	CpG island 1916	1632 bp distal
Sppl2b	signal peptide peptidase like 2B	within coordinates