rs48121796 SNP Detail

Summary

• ID
  rs48121796
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGTTTT CTCACAGTAA
  GCACTTCACT TAATTTGTAG TGAATGTGCC ATTGGACGTG CCAGATGGGG GAAGCTGTCA
  TAGATGAACA TCCTAAATTT CTTGTAGTAG CTCTAAGTTA ACCCATGGAT AAACTCATTT
  CCCCCCTTCT GTCTTGTTTC AAAGGATAGG TGACCCTTGT GTATGAAATA TGTGTGGGTG
  K
  AAAGCTTCAT TGTCTGGGAT CCAATATCTA AGCCGAGGTC TATGGCAGCT GTTTTACAAC
  TATGTAAGTG TAGGTAAATG ACAGCAGGGC AAAGTAGTCT CTGTTACAGA CTACAGGCAC
  TGCCTGGCCT TCAGGGGACC TCTCTGTAAG AAGCCAGTTT TGCTTCCTTT TGCACCTTCA
  TCTCAACATT CCTTTATTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423905	NES15399003	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48121796					SNP	G	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423905	NES15399003	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655578 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1152 bp downstream