rs48123382 SNP Detail

Summary

• ID
  rs48123382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:108539566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG GACGGGGGCT TGTGGAGGAA
  K
  GCCCCGGGGC GGTGTGTGTG TGTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136952711	ENSMUSSNP19244	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss323192704	CHEV_9_108564698	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48123382					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108539566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22350	CpG island 22350	within coordinates
Rr401686	regulatory region 401686	180 bp downstream
Rr686857	regulatory region 686857	259 bp distal
Slc25a20	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	Intron
Tssr87151	transcription start site region 87151	274 bp downstream
Tssr87152	transcription start site region 87152	148 bp downstream