rs48123842 SNP Detail

Summary

• ID
  rs48123842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135287295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGT AGGTGCTGGG GCTGCTCATC
  Y
  ACTTCGTGGA GGCTCAGCGG CCCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133802867	ENSMUSSNP5309452	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321986325	CHEV_6_135260315	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48123842					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135287295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	within coordinates
Gm36582	predicted gene, 36582	1858 bp downstream
Gm36640	predicted gene, 36640	within coordinates
Gm44274	predicted gene, 44274	1159 bp downstream
Pbp2	phosphatidylethanolamine binding protein 2	within coordinates
Tssr63760	transcription start site region 63760	52 bp downstream
Tssr63761	transcription start site region 63761	77 bp downstream