rs48124306 SNP Detail

Summary

• ID
  rs48124306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGTGGG TGCAGTCTTT
  ACCCTCACGG AACTCCAAGC ACTGCATAAA ATTCTTCTAC TTAGGATCTC GTGTGGCCCT
  GAATGGCTTT GAACATGCAC TGCAGCTGAC GATGCCTTGA ACTTCTCATC CTCCTGCCTC
  TGTCTTCCAG ATGCCGGGCT GCAGCTTAAA GGTCCTAGTG AGGTCTCAAC ATTCTCAATG
  R
  CTTCTCAGCA AAAGGCCCCA AGCTCCCATG GTGCATCAGG CTCTGCCTTC AGCGGTGCTC
  TTCATTCAGC CCAGCTGCCT CTTCGGTTTT TGAGAATAAA CCTGGGGAAG TTAATACGCA
  GTACTGGATC GGCTGGAGAG TCTGGATGCG TGAGAGTCAG GGCTCACTGA GCACACTGCT
  CTTCCACACT TCCTCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148324299	ENSMUSSNP6130865	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320620555	CHEV_2_172680451	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48124306					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696743 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	594 bp distal
Rr571756	regulatory region 571756	396 bp distal
Rr571757	regulatory region 571757	1303 bp proximal