rs48124536 SNP Detail

Summary

• ID
  rs48124536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20821130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAAAC CAAATACATT
  CAAACAAACC ATCCATGTAG ACCACCATCT GATCCTCGAA TCCAGCGGGG CAATGGAAGC
  TGCCTCATCC ATAGCTTCCT CCTTCCTGGT GTGCTATTGT GCCTCTGTCC AACAAAAGAA
  ATGAACCTCC TTGCTGTGGC GGCCCCTGAA TAGGCTGCGT GTGGAAGATC TCCATTCAGC
  Y
  ATGTAGGAAT AATAATAATA CCAGCCTCCC AGGCTCGTCA CAGCATCAGC ACGGTAATGT
  AAAGTCCTTA AAGTACAACT TTATCAGGTT CTCACAGTTA CTCTTCTGAG CCAGTTTCAC
  AGTGGAAAGG CAGATTCTAA TAAATGATTT GCAAATGGGA AATTTTGAAA GCTTCTCTGG
  TGTAGGGGTT TAGGTGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757486	NES17681624	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48124536					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757486	NES17681624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20821130 () rs orientation: forward

Symbol	Name	Function Class
Rr275299	regulatory region 275299	330 bp distal