rs48124640 SNP Detail

Summary

• ID
  rs48124640
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153470739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTTAAT TTGGGCTGGA
  GAGATGGCTT AGCAGTTAAA AGCACTGACT CAGAGGTCCT GAGTTCAATT CCCAGCAACC
  ACATGGTGGC TCACAACCAT CTGTAATGGG ATCTGAAGCC CTCTTCTGTA TGTCTGAAGA
  CAGCTACAGT GCATATATAT ATTTAAAAAA AAACGAGAGA GAGAGCCAGG TGGTGGTGGC
  C
  CACGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGCG GATTTCTGAG TTTGAGGCCA
  GCTTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTTGA
  AACACCTCCC TCCCCCTCCC CCCCCAAAAA AAAATTAAGC AGGTTTATTT TATGTGCCTG
  AGTATTCTGC TTGCATGTGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147999301	ENSMUSSNP2254031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48124640					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153470739 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Rr567709	regulatory region 567709			1616 bp proximal