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rs48126173 SNP Detail
Summary
  • ID
    rs48126173
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:40124346 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCCTTGATT GTTTTCTACT
    TCGTTTTCTC TGTTAGAAAA AAAGGGAGGG GGGGGACTAC ATCAGAGAGC TGCTATTGAA
    TGTCCACAGA TCCAGGTAGC AGGGGACAGA CAAGCATCTA GAATTCACCT GGAGGAAGGG
    AGTGGGCTGG GTTCTTACCT TGGGAGGCTG AGCATCTGGG ACAGAGCGCA GAGCACGTTG
    R
    AAGGCTTTGG GGACTTTCCT AGGGTGATTT TTTTTTTTTA AATGTACCTG ATGCCTCTCA
    GAAACCATAG CTTCCAGGCA GACTGGGCAG CACTCTAAGA CCTGCCTGGC ACACACAGTT
    ATTAGATAAA TGAATGTACT GGTTTTTTTC CCTCCTCTGC TTCTTAAAGT CTCTTCTCTT
    CAGTCCCCTA CTCTATTTTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60723894 NES16366429 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs48126173 SNP A A A A A A G A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60723894 NES16366429 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:40124346 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi194 CpG island 194 575 bp proximal
Gm16894 predicted gene, 16894 within coordinates
Il1r2 interleukin 1 receptor, type II within coordinates
Rr29353 regulatory region 29353 54 bp proximal
Rr396010 regulatory region 396010 550 bp upstream
Tssr62 transcription start site region 62 469 bp downstream
Tssr6411 transcription start site region 6411 437 bp downstream
Tssr6412 transcription start site region 6412 416 bp downstream
Tssr6413 transcription start site region 6413 402 bp downstream
Tssr6414 transcription start site region 6414 12 bp upstream
Tssr6415 transcription start site region 6415 905 bp upstream
Tssr11414 transcription start site region 11414 637 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory