rs48126977 SNP Detail

Summary

• ID
  rs48126977
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101937722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAGCGG GACAAGTGGG
  GGGGGGGGGC GCGTCCCAGG ACGGGGGGGG GGGGGGGGGT TAGCAGGTGC ACCTGGAGAA
  GATGCCAGGA GAGGATCAGA GAAATCTTGT TGGAAGCTGC TCTTTTGTAA GCAATCCAGA
  TAGTGCAGGC CCTGGCAGAG GGGCAAGGAA TCCAGGAAGG GAGAGGAGGC TCAGGTGGGA
  T
  GGGAAGACAG AAATACACGC CTCTGACTGT TCCTGGGACT GGGATGGATT CACTGAAACA
  CAAGACGTGT TTTCTCATCC CCCACTTCTC CACACACACA CACACACACA CACACACACA
  CACACCCTCA TGTGACCCGG AACTCTCAAA GCGACTCTCT CCACTTTAAT CCACCCAGAT
  CTTTGCGAAT TCTGTGGACA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148490961	ENSMUSSNP4490321	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48126977					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101937722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7794	CpG island 7794	815 bp distal
D15Mit40	DNA segment, Chr 15, Massachusetts Institute of Technology 40	15 bp proximal
Krt18	keratin 18	within coordinates
Rr311450	regulatory region 311450	within coordinates
Tssr133313	transcription start site region 133313	1076 bp downstream
Tssr133314	transcription start site region 133314	1052 bp downstream
Tssr133315	transcription start site region 133315	594 bp upstream