rs48127617 SNP Detail

Summary

• ID
  rs48127617
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132899128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATCCCTGAT TGATTGAGAA GGTGCTGTGA GGATGCAGTT
  GGACCCCTCA CCTCTTTTCT TCCTTCTGTG AGGTTGGGGA TGAACCCAAG CCCTTAGATA
  T
  ACTTTTTTTT TTTTAATTTA AAAAAATGTA GGTGTATGAG GGTTTTGCCT GCATGTATGT
  TAGTACACCT GCATGTATAT CTGTGCCTGG TGCCCTTGGA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147484314	ENSMUSSNP760221	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48127617					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132899128 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	103 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr601216	regulatory region 601216	936 bp distal
Tssr1326	transcription start site region 1326	872 bp upstream
Wasf2	WASP family, member 2	within coordinates