rs48129088 SNP Detail

Summary

• ID
  rs48129088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT ACATGTTTCA GCCTCCAAAA
  Y
  CATAAGCCAA AAGGAACTTG TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60987113	NES16140800	PERLEGEN	MM_PANEL2	f	SNP		C	C		C		C	C	T	C
ss148642698	ENSMUSSNP3913835	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322127375	CHEV_7_29938889	CHEVERUD	SCREENING_POP	f	SNP						T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48129088					SNP	T	?	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987113	NES16140800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853295 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1810 bp upstream
Cpgi18740	CpG island 18740	1429 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	within coordinates
Rr644490	regulatory region 644490	337 bp proximal
Rr644491	regulatory region 644491	1320 bp proximal
Rr644492	regulatory region 644492	1832 bp proximal
Tssr65599	transcription start site region 65599	1773 bp upstream
Tssr65600	transcription start site region 65600	1801 bp upstream
Tssr65601	transcription start site region 65601	1874 bp upstream
Tssr71610	transcription start site region 71610	1727 bp downstream
Tssr71611	transcription start site region 71611	1752 bp downstream
Tssr71612	transcription start site region 71612	1847 bp downstream