rs48129423 SNP Detail

Summary

• ID
  rs48129423
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37742236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC TCCAGAAGGT CACTATTCCC
  C
  ACTTGAACCT CTCAGTGCTT TTTGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134811113	ENSMUSSNP3062434	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320711769	CHEV_3_37587009	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48129423					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37742236 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	345 bp upstream
Rr575540	regulatory region 575540	836 bp distal
Rr575541	regulatory region 575541	916 bp distal
Rr575542	regulatory region 575542	356 bp distal
Rr575543	regulatory region 575543	163 bp distal