rs48129506 SNP Detail

Summary

• ID
  rs48129506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74317626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGCTTC AATTCTGATC
  ACAGAATCTC GTGCCTTAAA GCGGCCCTCC AATGTGCTGG GCAGCATTTG TACAAGGAGT
  TCATCAGCAA ACTGCAGGGA CTGCTTGCTT ATGTCTATTA AAAACACTTT GAGGCATTTT
  GGGTGCATAC TTTGTTTATG AAGGAAAAAT CCTACCCAGG ATAACTTAAG GAGCAGTTTA
  Y
  TGTGCATTAA AATGAAGATA AAACGGAGTG TTTCTGAGGC CACCCTATCA GGAATGGGAA
  GCTGTTGGAC ACATCTATGG AAAGCCCCAG TTTAGCATCT CTCAGCTACA AAACAGATCA
  GATACTTCGT GTGGCTGAGC GGGCAGTGGG CGGCTCAAAC AGCTCCCACC ACGGCTGAGG
  AGGCTGAGGT GCTACAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52661992	NES15473358	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48129506					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52661992	NES15473358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74317626 () rs orientation: forward

Symbol	Name	Function Class
Exoc3	exocyst complex component 3	within coordinates
Rr284943	regulatory region 284943	626 bp distal
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	65 bp downstream