rs48130277 SNP Detail

Summary

• ID
  rs48130277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52649164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTATCCA CCCTACCTAC
  TGTAGTACGC AATTTTATCC ATAACTAGAA GTGGCCTCGC TGAGGGGAGG GGTAGAGTCT
  GTAACCTAGG AAGACTAAGG GAGTGGGGTG GCTGGGTGGA GAAGTCTTCA TCCCGACTGG
  GTAAAGGCTT TCTAGGCGTA ACTTGGGGGG ATGAACACCC TGGCTCTGTG AGCAACTCCT
  Y
  CTTTACGTCA TAGAAGGAAG CTCAACTCAC CATTCCCTCC GCAGAGTGTC CTTTGGAGGA
  CTCTTCTGTT TGCTGCTGGA ACAAGGATAG GCCTTGTCTG TCTGCTCAAG AGAAGGAATT
  TTAGCTGACT AGCCTAGGCT GGGCTTGTAT TCACTATGTA GGGAAATCTG CCCTTGAACT
  TCTAGTTCTT CTCTGTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137738303	ENSMUSSNP4837844	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48130277					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52649164 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	59 bp upstream
Cpgi4596	CpG island 4596	593 bp proximal
Gm24859	predicted gene, 24859	1407 bp upstream
Rr387217	regulatory region 387217	1855 bp downstream
Rr403283	regulatory region 403283	1272 bp upstream
Rr466025	regulatory region 466025	74 bp distal
Rr466026	regulatory region 466026	within coordinates
Rr466027	regulatory region 466027	1973 bp proximal
Tssr116285	transcription start site region 116285	33 bp upstream
Tssr116286	transcription start site region 116286	10 bp upstream