rs48130350 SNP Detail

Summary

• ID
  rs48130350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121983124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTCTA GGAAAGGGGA
  ATTGATGAAG GGGGTGGGGA TGGGTGATCT GCCCAGACAA GCAGTTACCA AATGGTGGAG
  CCAGAACTCA CCTCCTTTAA GAAGGTGATT GTCCTACAAA CTCATTTGAT GGTGAGGTCT
  GGAATGTAAA TAATGTAATG TTCGGCTAAC CTTCTCCTTC TCTCCCTCCC TTCCCCTTTT
  Y
  TTTTCAGCTC TGAAGATTCA TTTGAACCTG CTTAATTACA AATCCAGTTT CTAATATGCT
  ATACAATTTA TGCACGCAGA AAGAAATAGC AATGTACACA TCACCTTCTT TATATCTTAC
  TTTAAATATT TTATGCATGT TTTCAAAAAA TTGGAAATAT CCTAGATAGC TGAGCAATAA
  ATCTTCAATA AGTATTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147410094	ENSMUSSNP4820750	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48130350					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121983124 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19811	transcription start site region 19811	1757 bp downstream
Tssr19812	transcription start site region 19812	1713 bp downstream
Tssr19813	transcription start site region 19813	1695 bp downstream
Tssr19814	transcription start site region 19814	1677 bp downstream
Tssr19815	transcription start site region 19815	1663 bp downstream
Tssr19816	transcription start site region 19816	1642 bp downstream
Tssr19817	transcription start site region 19817	1617 bp downstream
Tssr19818	transcription start site region 19818	1558 bp downstream
Tssr19819	transcription start site region 19819	1539 bp downstream
Tssr19820	transcription start site region 19820	24 bp downstream
Tssr19821	transcription start site region 19821	within coordinates
Tssr19822	transcription start site region 19822	108 bp upstream
Tssr19823	transcription start site region 19823	141 bp upstream
Tssr19824	transcription start site region 19824	196 bp upstream
Tssr19825	transcription start site region 19825	219 bp upstream
Tssr19826	transcription start site region 19826	259 bp upstream
Tssr19827	transcription start site region 19827	288 bp upstream
Tssr19828	transcription start site region 19828	325 bp upstream
Tssr19829	transcription start site region 19829	369 bp upstream
Tssr25955	transcription start site region 25955	1721 bp upstream
Tssr25956	transcription start site region 25956	1645 bp upstream
Tssr25957	transcription start site region 25957	1513 bp upstream
Tssr25958	transcription start site region 25958	219 bp downstream
Tssr25959	transcription start site region 25959	419 bp downstream