rs48131096 SNP Detail

Summary

• ID
  rs48131096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77872344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCCTAGT GATGAGCCTC CACCCCCTGT AAGTTGTCAC
  ATCCCCAAAC AGTGCCACCA ACTCCATGGG AGGCGCTTTT CATTCAAATC AACACAGGGA
  Y
  GCAGACATAG CTGCCAGCGG TCCCATGAAC ATCAGACTGA CAGTAGAAAG AGGAAGGTAC
  TACACTGGGG ATGCAGGGAT AGTAGTTCAT GTCCAGTTGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63193979	NES17463827	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48131096					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63193979	NES17463827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77872344 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	1775 bp downstream
D18Mit47	DNA segment, Chr 18, Massachusetts Institute of Technology 47	1432 bp proximal
Rr347429	regulatory region 347429	1144 bp distal
Rr347430	regulatory region 347430	457 bp proximal
Rr347431	regulatory region 347431	1857 bp proximal
Rr350215	regulatory region 350215	344 bp distal
Rr356493	regulatory region 356493	within coordinates