rs48132540 SNP Detail

Summary

• ID
  rs48132540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11368018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCTTCC CTTCCTTAAT
  TCAAATCCAC GGTGGAAGAG GGAGGCTTCC TAACCAGTGT CAGTCCTGAA GTGTATGAGT
  TATAGGATGG CTCCACCTCT AGCTCACTTG GGAATCCGTA GCCCTGTTAG CCCTCATCTG
  TCAGGCCTTA TTACATGTCT TCCCTGGAGC TGGGCTCACT TGGTTGTGGG AGAGTCAGTG
  R
  TGTGACAAAA CTGGGGACAA ATGTTCCGGA CAACAGTTAG ATGGTTTCCT AAAAGCTCTG
  TAGCAGGAGA GTGGCTTGTG AGTGGTGGAG GAGGTGGAGG AAGCTGTCAG AGCTTTGGAA
  GCACCATCAC TGCTGATCTC GGGTATTGCC GGTGTTGGTG TTGGTAGTGT GTACCTGACT
  TTTACCCTGG AAATGACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63647846	NES17057558	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48132540					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647846	NES17057558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11368018 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	within coordinates
Rr391334	regulatory region 391334	1595 bp upstream
Snx29	sorting nexin 29	Intron