rs48135142 SNP Detail

Summary

• ID
  rs48135142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78319010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGATT GGGCTGGCCT
  GGGCAGCCAG GTGGTGGCCT CTTGCAATGT ACTTTTTGGC TGGTCACTGA GCAAGGTGGC
  AGGTCCCCAT TCCCCTTCCA CTCATGGCCA GCCACTATAC TGATTCCTGG GAGATGTTAG
  GGTATAGTAG CTGGCTACCA TGGACCTGGA AGGATCTGGA AGGACCACAA GTGGCTGGAA
  Y
  TGCATCTAAG GACAATCCAG GGCTGTCCTG AATCAGGCTT GCTTGCCAGA CAAATAGAGC
  AATTGATTGT TATTATACAG CATAGGAGAT CAAAGTCCGT AGGCAAGGGC AATTGCTGAG
  TGTTTGAGCC CCTGTTTGGT TGATAAATAG TGTTTCACCC ACACTGTCTA GTGAATCCAT
  TCTTGTTCTA CCCAGAATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52381080	NES15269814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48135142					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52381080	NES15269814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78319010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1783	CpG island 1783	690 bp distal
Gm9978	predicted gene 9978	1394 bp downstream
Rr225087	regulatory region 225087	209 bp distal