rs48135350 SNP Detail

Summary

• ID
  rs48135350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18781559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGATTGGG TATGCTAATT
  AAGGTGGACA AAAGGATGCT CTGATTGCTG AACCATGGTA GTGTATGGGT CAGAAGATCG
  CTGACAGAAC ACCTGGACTC AGATGGAATG CAAAGATAAA CAACATTTAT TCTGCAGAAG
  CAACCAGCAT GCTGGGGTCA ACCATTCTGC AAAATGGTGA CCCCAGATAA AGGCATTACA
  R
  GTATTCTTAT AGGGAACCAT GGGGATTCTT TAGGTGATTG GGAGGAGTTA AAGTGGTCAC
  ATTACTTTGC TTGACTACAA TGTTAGTTCT GCTATATTTA GAGACTGGGT TAGGTAACCT
  AAAATTGCAT TGGTGGGTGC TGGGGAGGTC ACAGAGGTCA ATTTCTGATT GGCTTGTGAC
  AGGTGGTCAG TGGTCTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60701765	NES16351156	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48135350					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60701765	NES16351156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18781559 () rs orientation: forward

Symbol	Name	Function Class
Gm5252	predicted gene 5252	1999 bp downstream
Gm70695	predicted gene, 70695	1026 bp downstream