rs48135562 SNP Detail

Summary

• ID
  rs48135562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:44338542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAGCAAGT TCAAACCAAA CCTAGGCTAC AGACTGACAC
  CCTACTCAAC ACTCCTTAGA CCCCCAGAAG ATTAGTCCCT AAAAACAGGT TCCTGTGACA
  R
  TTTTACAAAT GTTGTCCACT GTCATTTCCA TAGAAAGCCG GAGCACTTGA CAGAGCTGTG
  TCAAATACTC CACTGACACT GGGCATCTGT CAGTCAGAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62288877	NES17220262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48135562					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62288877	NES17220262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:44338542 () rs orientation: forward

Symbol	Name	Function Class
BC151093	cDNA sequence BC151093	1702 bp upstream
Ear2	eosinophil-associated, ribonuclease A family, member 2	1569 bp upstream
Gm49099	predicted gene, 49099	within coordinates
Rr288624	regulatory region 288624	542 bp distal
Rr299065	regulatory region 299065	1259 bp proximal
Tssr125197	transcription start site region 125197	1570 bp upstream