rs48137899 SNP Detail

Summary

• ID
  rs48137899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125855923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCTGAG GATGGGGGTG
  ACAAGCAGCC CACCGCCCTA TCACTCCCTC GCTCAGAAGT GCCCACATGG CTTCTCCCAC
  TGCCAAGTGC AATACAGAGC CTTTCTGGAA ACACGCTGGC CATGGGCCTT CCTTCTAATA
  ACTGACAGCA TTAGCCATCA GAAACCAGGA ACACGGCTGA CTTCAGAGGG GTTAAAAATG
  Y
  TCTAGAACAG TGGTTCTCAA CCTCCCTAAC GCTGCAACCT TTCAATAGCT CCTGGTATTA
  TGGTAACCCC CAACAAAATT GTTTTCATTG CTACTTCATA ACGGCAATTC TTCTGCTGTT
  GTGAATAAAT GTGAAATCTG AATAAATGTG AAAGGGTCTT TAGAAGGTCA CGATTATAAA
  TATCTGTGAA AGGGTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147404266	ENSMUSSNP5811748	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48137899					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125855923 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	642 bp upstream
Rr599574	regulatory region 599574	768 bp distal
Rr599575	regulatory region 599575	485 bp proximal
Rr599576	regulatory region 599576	803 bp proximal