rs48138489 SNP Detail

Summary

• ID
  rs48138489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124141559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTGCAG TTGACACTGG
  AACCTGAGCG CTGGCAGCTC TGTCACCAAG TACCAGGCTT TCTCTAGATT GCTATAGGCC
  AGACCAACCA TTACCCTCTT CTCATCTCCT CAAGGATTCC CTGACTGAGG CCCCTGCTGT
  TCCAACCTGG AACCCCTGTG GTTTCCCAAG GGTCTCACCA GTAGTTAATA CCAGTGCACC
  R
  TCTGAGACCA TGTGCTACAG TGGGCAGTTT CCAGACTTGG AGTGTTGGGT TAGGACCTTG
  ACCTGCATGC CACACACTCC GTGTTCTAGA GAGTGCAGCC CCAACAGAGG TGTCAGGGCT
  CCTCATGCCC ACTCAGCATT TATAGGACAC AAGAATGGTC CCCACTGTGA AGCCTGCCTT
  CTCCAGATGG AGCCAGCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835810	NES16017009	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48138489					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835810	NES16017009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124141559 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	1152 bp upstream
Hip1r	huntingtin interacting protein 1 related	296 bp downstream
Rr620320	regulatory region 620320	within coordinates
Rr620321	regulatory region 620321	733 bp proximal
Tssr48832	transcription start site region 48832	1492 bp upstream
Vps37b	vacuolar protein sorting 37B	1145 bp downstream