rs48138770 SNP Detail

Summary

• ID
  rs48138770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100144009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA GGTCAGAAGA CAACTCAGGC
  S
  TCCTACCATC TGTGTCCCAA TGGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145533144	ENSMUSSNP3221332	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss322348744	CHEV_7_107643311	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48138770					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100144009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	1092 bp distal
Gm72028	predicted gene, 72028	1553 bp upstream
Rr368386	regulatory region 368386	920 bp upstream
Rr400469	regulatory region 400469	1353 bp downstream
Rr652131	regulatory region 652131	1783 bp distal
Rr652133	regulatory region 652133	1455 bp distal
Tssr68123	transcription start site region 68123	1478 bp downstream
Tssr68124	transcription start site region 68124	1432 bp downstream
Tssr68125	transcription start site region 68125	988 bp downstream
Tssr68126	transcription start site region 68126	954 bp downstream
Tssr68127	transcription start site region 68127	847 bp downstream
Tssr68128	transcription start site region 68128	714 bp downstream
Tssr68129	transcription start site region 68129	472 bp downstream
Tssr68130	transcription start site region 68130	89 bp upstream
Tssr68131	transcription start site region 68131	1185 bp upstream
Tssr68132	transcription start site region 68132	1925 bp upstream
Tssr73743	transcription start site region 73743	875 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates