rs48139248 SNP Detail

Summary

• ID
  rs48139248
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185321418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTTGAT TGACAGGGAG
  GAGCCCCTCT TGCAGCTAGC TATGGGCATT CCAGGTAGAC TAGTCATGAG GACACTTGTG
  AGGGACAAGT GAGACAGACA CATGGGAAGA GAGCAGGACA GCAGGATGCA CAAGGGTGGA
  GATAAGTGGT TATCTTTATT TATTTATTTT TAACTTCTTA TTGATTCCTT GTAAGTTTCA
  W
  ATCATGTACC CCAATCTCAC TCATCTTCCC ATCCCCTCAT ATTCACATTC ACCCCTTCTG
  CCCTTGCAAA ATAACACACA CACACACACA CACACACACA CACACACACA CACACACACA
  CCCTAAGCAT AGAAAACATC TCATCATAGA TGCTGTAGTA TACCACAGTA TGTCCCACAG
  TATACCACTC TGTCCACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320177579	CHEV_1_187413100	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48139248					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185321418 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	504 bp distal