rs48139356 SNP Detail

Summary

• ID
  rs48139356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121711444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTAAAA CACAATTAAG
  GAAATCATTC CATTTTTCTT ACCCTTGGGC ACTCTACAGT CCTCTATTGG GTCTCTATAT
  AGTTACTACG CCATCATAAG TAGTTTGTCC TCCTAATGCT AATGTGGACC TCTAACTCTA
  CAGAATACAG CATTCTGGGT TAGTCTCCTG ACGGGCATTT CATCTGTTTC CTGTTGACTC
  S
  TCCGCTTTGA CGAACTGTTT GCATCAGCCT ATAAATATGC CCAAGCATCC TAGACGCACA
  CATCCATAAT CTTTTCCTGT TGTCTGTTAA TTTTAGTAGC CTGTAACCTT GATTTTGTTC
  TCTGTCTTAC CGTCAGTTGG AACTGTTCCA TCTCTGCAAT CCTGAATTCC ACCATCTAAA
  CACAACCTTC TGGCAACTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135731806	ENSMUSSNP3102212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48139356					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121711444 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584205	regulatory region 584205	286 bp distal