rs48140787 SNP Detail

Summary

• ID
  rs48140787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGTTTA CAACGTACGC
  GAAGTCATGC CTTGACATTT TTACTCTTAA CATCATTTGG AAAGGTTCAA GCTGGTACAA
  TTGTAACGCC AGCTCTACTA TTCTAGTTTC AAAGCGCCCA GAGTGTTTAT TGCTGGAAAG
  TCCAGCAATA GGTAGCAGGT CCCTTGTGGA GGCTAGAGAT GGTTTCGTTT GGAGAGTAAA
  Y
  CAAGGTCCAG GATGAAGTCA AAAGAAGGGG GCTCTGCAAC CCGCCTTTAA GATACCCACT
  AACAGCAACC ATTTTCTCAT CACAGAGGCA AGGCTAACTG ACCTGGAAAG GAGGAGCCTG
  GGCTGCTGTC CCTCAACGGA AGAACCAAAG AGAAAGAAAA AAACAAACAG CACCCGGGAA
  GCCTGGATCG TACCTGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198255	NES16702737	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48140787					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198255	NES16702737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052962 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1899 bp upstream
Rr614420	regulatory region 614420	1910 bp distal
Rr614422	regulatory region 614422	1220 bp distal
Tssr47224	transcription start site region 47224	1394 bp downstream
Tssr47225	transcription start site region 47225	1292 bp downstream
Tssr47226	transcription start site region 47226	1223 bp downstream
Tssr47227	transcription start site region 47227	1029 bp downstream
Tssr47228	transcription start site region 47228	966 bp downstream
Tssr47229	transcription start site region 47229	945 bp downstream
Tssr47230	transcription start site region 47230	920 bp downstream
Tssr47231	transcription start site region 47231	890 bp downstream
Tssr47232	transcription start site region 47232	743 bp downstream
Tssr47233	transcription start site region 47233	693 bp downstream
Tssr47234	transcription start site region 47234	658 bp downstream
Tssr47235	transcription start site region 47235	85 bp upstream
Tssr47236	transcription start site region 47236	105 bp upstream
Tssr47237	transcription start site region 47237	154 bp upstream
Tssr47238	transcription start site region 47238	160 bp upstream
Tssr47239	transcription start site region 47239	220 bp upstream
Tssr47240	transcription start site region 47240	232 bp upstream
Tssr47241	transcription start site region 47241	247 bp upstream
Tssr47242	transcription start site region 47242	284 bp upstream
Tssr47243	transcription start site region 47243	307 bp upstream
Tssr47244	transcription start site region 47244	341 bp upstream
Tssr47245	transcription start site region 47245	361 bp upstream
Tssr47246	transcription start site region 47246	412 bp upstream
Tssr47247	transcription start site region 47247	456 bp upstream
Tssr47248	transcription start site region 47248	519 bp upstream
Tssr47249	transcription start site region 47249	589 bp upstream
Tssr47250	transcription start site region 47250	727 bp upstream
Tssr47251	transcription start site region 47251	791 bp upstream
Tssr47252	transcription start site region 47252	843 bp upstream
Tssr51810	transcription start site region 51810	1960 bp upstream
Tssr51811	transcription start site region 51811	1906 bp upstream
Tssr51812	transcription start site region 51812	876 bp upstream
Tssr51813	transcription start site region 51813	859 bp upstream
Tssr51814	transcription start site region 51814	104 bp downstream
Tssr51815	transcription start site region 51815	138 bp downstream
Tssr51816	transcription start site region 51816	172 bp downstream